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Chemistry News Archive August 2009


 
Chemistry News August 2009

News of the year 2009 in the fields of chemistry and chemistry-related topics like biochemistry, nantechnology, medicinal chemistry etc.

Main focus: press releases, scientific research results and summaries of chemistry articles, that are published in chemistry journals.

Please send us a eMail to publish your press release!



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Chemistry

 

Boost for Methanol?
New solid catalyst for the direct low-temperature oxidation of methane to methanol.

 

Cylcopamine
Of cyclops and lilies: new strategy for the synthesis of cylcopamine, a potential cancer treatment.

 

Researchers make carbon nanotubes without metal catalyst
Oxides, as well as metals, seem to be able to sprout carbon nanotubes.

 

Aryl Fluorides
New chemical synthesis could streamline drug design. New method gives drug designers more flexibility.

 

Navigating in the ocean of molecules
A computer program points the way to new candidate agents.

 

New clues about a hydrogen fuel catalyst
View of rhodium-based catalyst for hydrogen-fuel system offers ideas for improvement.

 

Rapid heating prepares energy-saving zeolite for greater role in industrial separations
New technique eliminates grain boundary defects.



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Physics - Fundamental Research

 

The Uncalculability of Electron Systems
Theoretical physicists of the Max Planck Institute of Quantum Optics reveal limitations of Density Functional Theory using Quantum Information Theory tools.

 

SLAC Researchers Reveal the Dance of Water
About the inhomogeneous structure of water at ambient conditions.

 
Crystal/Liquid Interface

Crystal?liquid Interface

Physicists make crystal/liquid interface visible for first time.

Image:

Physicists make crystal/liquid interface visible for first time. PNAS report about the equilibrium intrinsic crystal?liquid interface of colloids.

[Image credit: Eric Weeks Lab/Emory University]

 

Single-molecule technique captures calcium sensor calmodulin in action
Unknown workings of a signaling protein unfold in the hands of biophysicists, through atomic-force spectroscopy.

 
Microfluidic Device

New microchip technology performs 1,000 chemical reactions at once

Technique may accelerate drug discovery for cancer, other diseases.

The image shows is a microfluidic device held in the palm of the hand.

[Image credit: UCLA]

 
Metallic Hydrogen

Hydrogen under pressure

On the path to metallic hydrogen.

The hydrogen based compound SiH4(H2)2 may be a useful system in which to explore metallic hydrogen.

 

[Image copyright American Physical Society (Illustration: Alan Stonebraker after T. Strobel et al.)]

 
Microfluidic Palette

Microfluidic Palette Technology

'Microfluidic palette' may paint clearer picture of biological processes.

The image shows the NIST microfluidic palette. The mixing area is the pin-sized chamber bordered by three holes in the center of the top layer.

[Image by G. Cooksey, NIST]

 

Anomalous Brownian Motion
Rethinking Brownian motion with the 'Emperor's New Clothes'.

 
The heat transfer between objects separated by nanoscale distances

Breaking the Planck law, at the nanoscale

Bringing objects close together can boost radiation heat transfer, according to new study that shows breakdown in Planck's law.

Image: A diagram of the setup, including a cantilever from an atomic force microscope, used to measure the heat transfer between objects separated by nanoscale distances.

[Image credit: Sheng Shen; MIT]



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Chemistry & Biology

 

Nanogap Sensor Array
New ultrasensitive electronic sensor array speeds up DNA detection: Singapore scientists developed cost-effective technology for disease diagnosis and biological research.

 

Pioneering research succeeds in producing industrially vital chemical through engineered bacteria: Metabolic engineering could herald the end of fossil fuels in industrial chemical production.

 
Molten protein

Molten Proteins

Surface-modified liquid protein with liquid-crystalline properties.

[Image credit: Angewandte Chemie, Wiley-VCH]

 

Progress Toward Artificial Cells
Synthesis of uniform, unilamellar vesicles by means of microfluidics.

 

Anntoxin
The first gene-encoded amphibian toxin isolated.

 

Sequence-specific Hydrolysis of DNA
Newly found DNA catalysts cleave DNA with water molecule.

 

Molecular Switches
From cell division to ageing - scientists locate main cell switches.

 

Protein folding: Diverse methods yield clues
Comparison finds approaches of protein study are complementary.

 

Biomimetic Chemistry
NYU chemists discover twisted molecules that pick their targets.

 

Scientists find early evolution maximized the 'spellchecking' of protein sequences
The C-Ala Domain Brings Together Editing and Aminoacylation Functions on One tRNA.

 

Digging up Dirt
Novel natural product from environmental DNA: Erdacin is a powerful antioxidant.

 

Protein Folding
New computer simulation helps explain folding in important cellular protein.



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Chemistry & Medicine

 

Salinosporamide A

Learning from evolution: Fine-tuning an anti-cancer drug.

Researchers have determined in detail how the bacteria-derived molecule Salinosporamide A disables the intracellular waste-processing plants called proteasomes.

[Image credit: TUM]

 

Researchers identify potential new avenue to attack cancer
Ubiquitin-mediated Degradation of the Formin mDia2.

 

Aptamer-Functionalized Liposomes
New cancer drug delivery system is effective and reversible.

 

Ramoplanin A2
Structure of antibiotic ramoplanin reveals promising mechanism.

 

Quorum Sensing
Communication breakdown: New strategy may be valid alternative to traditional antibiotics.



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Chemistry & Environment

 
The Western corn rootworm is a devastating pest of maize roots

Restoring a natural root signal helps to fight a major corn pest

Field trials in the US show that enhancing the attractiveness of maize roots to insect-killing nematodes can effectively fend off Western corn rootworm.

Image: The Western corn rootworm (insert) is a devastating pest of maize roots.

[Credit: Matthias Held and Sergio Rasmann, University of Neuch?el, Switzerland]

 

Epoxides in Atmospheric Chemistry
Caltech researchers show how organic carbon compounds emitted by trees affect air quality. The research provides first-ever glimpse of role of epoxides in atmospheric chemistry.



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Chemistry & Geology

 

Carbonyl Sulfide
The greenhouse gas that saved the world: Chemistry researchers uncover why the archean world was not frozen solid.



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Chemistry & Nanotechnology

 

Self-Destructing Messages
Light-reactive coatings make metal nanoparticles into inks for self-erasing paper.

 

Low-cost Photovoltaics
Lower-cost solar cells to be printed like newspaper, painted on rooftops.

 

Nanocrystal Growth
Berkeley Lab Researchers Record First Real-Time Direct Observations of Nanocrystal Growth in Solution.

 

Plastic Solar Cells
Plastics that convert light to electricity could have a big impact.



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Chemistry & Materials

 

Metal-organic Frameworks
Safer, denser acetylene storage in an organic framework.



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ACS News:

 

 

Nuisance or nutrient? Kudzu shows promise as a dietary supplement

Kudzu, a nuisance vine, shows promise as a dietary supplement that fights an unhealthy condition called metabolic syndrome.

[Credit: Wikimedia Commons]

Kudzu, the nuisance vine that has overgrown almost 10 million acres in the southeastern United States, may sprout into a dietary supplement. Scientists in Alabama and Iowa are reporting the first evidence that root extracts from kudzu show promise as a dietary supplement for a high-risk condition - the metabolic syndrome - that affects almost 50 million people in the United States alone. Their study appears in the current issue of ACS' Journal of Agricultural and Food Chemistry, a bi-weekly publication.

J. Michael Wyss and colleagues note in the new study that people with metabolic syndrome have obesity, high blood pressure, high blood cholesterol, and problems with their body's ability to use insulin. Those disorders mean a high risk for heart attacks, strokes, and other diseases. Scientists have been seeking natural substances that can treat the metabolic syndrome. The new study evaluated kudzu root extracts, which contain healthful substances called isoflavones. People in China and Japan long have used kudzu supplements as a health food.

The study found that a kudzu root extract had beneficial effects lab rats used as a model for research on the metabolic syndrome. After two months of taking the extract, the rats had lower cholesterol, blood pressure, blood sugar, and insulin levels that a control group not given the extract. Kudzu root "may provide a dietary supplement that significantly decreases the risk and severity of stroke and cardiovascular disease in at-risk individuals," the article notes.

Journal of Agricultural and Food Chemistry: "Chronic Dietary Kudzu Isoflavones Improve Components of Metabolic Syndrome in Stroke-Prone Spontaneously Hypertensive Rats" [J. Agric. Food Chem., 2009, 57 (16), pp 7268?7273, DOI: 10.1021/jf901169y].

 

People vary widely in ability to eliminate arsenic from the body

Arsenic Sample

Large variations exist in people's ability to eliminate arsenic (sample shown) from the body, a new study shows.

[Credit: Wikimedia Commons]

Large variations exist in peoples' ability to eliminate arsenic from the body, according to a new study that questions existing standards for evaluating the human health risks from the potentially toxic substance. The study found that some people eliminate more than 90 percent of the arsenic consumed in the diet. Others store arsenic in their bodies, where it can have harmful effects. The research, based on the first application of new methods for studying arsenic, is scheduled for the Sept. 21 issue of ACS's Chemical Research in Toxicology, a monthly journal.

In the study, Kevin Francesconi and colleagues point out that drinking water in many parts of the world, including some regions of the United States, contain amounts of arsenic that exceed the World Health Organization's maximum acceptable levels. Consumption of seafood, the article notes, is another major source of arsenic contamination. Health effects from chronic arsenic exposure include skin and internal cancers, cardiovascular disease, and possibly diabetes, it adds.

The scientists describe monitoring arsenic excretion in the urine of human volunteers. They found that ability to eliminate arsenic from the body varied greatly, with some participants excreting up to 95 percent of the ingested arsenic but others eliminating as little as four percent. "This observed individual variability in handling [arsenic] exposure has considerable implications for the risk assessment of arsenic ingestion," the paper states. It adds that further study is needed to assess potential risks to humans consuming seafood products. "The data presented here suggest that the long held view that seafood arsenic is harmless because it is present mainly as organoarsenic compounds needs to be reassessed."

Chemical Research in Toxicology: "Individual Variability in the Human Metabolism of an Arsenic-Containing Carbohydrate, 2',3'-Dihydroxypropyl 5-deoxy-5-dimethylarsinoyl-?D-riboside, a Naturally Occurring Arsenical in Seafood" [Chem. Res. Toxicol., Article ASAP, Publication Date (Web): July 23, 2009, DOI: 10.1021/tx900158h].

 

Heat forms potentially harmful substance in high-fructose corn syrup

Apis mellifera

A new study shows that heat can produce a potentially toxic substance in high-fructose corn syrup that may kill honeybees and might also endanger human health.

[Credit: Wikimedia Commons]

Researchers have established the conditions that foster formation of potentially dangerous levels of a toxic substance in the high-fructose corn syrup (HFCS) often fed to honey bees. Their study, which appears in the current issue of ACS' bi-weekly Journal of Agricultural and Food Chemistry, could also help keep the substance out of soft drinks and dozens of other human foods that contain HFCS. The substance, hydroxymethylfurfural (HMF), forms mainly from heating fructose.

In the new study, Blaise LeBlanc and Gillian Eggleston and colleagues note HFCS's ubiquitous usage as a sweetener in beverages and processed foods. Some commercial beekeepers also feed it to bees to increase reproduction and honey production. When exposed to warm temperatures, HFCS can form HMF and kill honeybees. Some researchers believe that HMF may be a factor in Colony Collapse Disorder, a mysterious disease that has killed at least one-third of the honeybee population in the United States.

The scientists measured levels of HMF in HFCS products from different manufacturers over a period of 35 days at different temperatures. As temperatures rose, levels of HMF increased steadily. Levels jumped dramatically at about 120 degrees Fahrenheit. "The data are important for commercial beekeepers, for manufacturers of HFCS, and for purposes of food storage. Because HFCS is incorporated as a sweetener in many processed foods, the data from this study are important for human health as well," the report states. It adds that studies have linked HMF to DNA damage in humans. In addition, HMF breaks down in the body to other substances potentially more harmful than HMF.

Journal of Agricultural and Food Chemistry: "Formation of Hydroxymethylfurfural in Domestic High-Fructose Corn Syrup and Its Toxicity to the Honey Bee (Apis mellifera)" [J. Agric. Food Chem., 2009, 57 (16), pp 7369?7376, DOI: 10.1021/jf9014526].

 

A better test to detect DNA for diagnosing disease, investigating crimes

Test to detect DNA

Scientists have developed a new electronic sensor that shows promise as a better way to detect DNA for diagnosing disease and investigating crimes.

[Credit: Wikimedia Commons]

Researchers in Singapore are reporting development of a new electronic sensor that shows promise as a faster, less expensive, and more practical alternative than tests now used to detect DNA. Such tests are done for criminal investigation, disease diagnosis, and other purposes. The new lab-on-a-chip test could lead to wider, more convenient use of DNA testing, the researchers say. Their study is scheduled for the Sept. 2 issue of the Journal of the American Chemical Society, a weekly publication.

In the new study, Zhiqiang Gao and colleagues note that current methods for detecting DNA involve the used of the polymerase chain reaction (PCR). This technique "amplifies" or makes multiple copies of trace amounts of DNA, much as a photocopier produces multiple copies of documents, in order to detect the genetic material more easily. The amplification step is one reason why tests involving PCR can be too expensive, cumbersome, and imprecise for wider use.

The researchers describe development of a so-called "nanogap sensor" that appears to overcome those obstacles. The process uses a pair of micro-sized metal electrodes separated by a nanogap, 1/50,000 the width of a human hair, in combination with special chemical probes, to capture tiny segments of DNA. The newly formed "circuit" then translates the presence of DNA into an electrical signal so that it can be measured by a computer. In laboratory tests, the sensor showed "excellent" sensitivity at detecting trace amounts of human DNA and may eliminate the need for DNA amplification altogether, the researchers say.

Journal of the American Chemical Society:

"Mass-Produced Nanogap Sensor Arrays for Ultrasensitive Detection of DNA" [J. Am. Chem. Soc., 2009, 131 (34), pp 12211?12217, DOI: 10.1021/ja901704t].

 

Pinhead-size worms + robot = new antibiotics

Pinhead-sized worm

This pinhead-sized worm could play an important role in discovering and testing new antibiotics, researchers say.

[Image credit: Wikimedia Commons]

In an advance that could help ease the antibiotic drought, scientists in Massachusetts are describing successful use of a test that enlists pinhead-sized worms in efforts to discover badly needed new antibiotics. Their study appeared in ACS Chemical Biology, a monthly journal.

Frederick Ausubel and colleagues note in the new study that existing methods for identifying germ-fighting drugs involve adding the potential drug to cultures of bacteria or cells and watching the results. These tests sometimes do not work well. They may give passing grades to potential drugs that are toxic, or that fight bacteria in the same ways as existing antibiotics that are loosing effectiveness against drug-resistant bacteria. A much better test would involve screening of potential new antibiotics in living animals infected with bacteria to see the effects on the entire body of the animal.

The scientists describe successful use of such a whole-animal high throughput screening test - automated with a robot - to test the effects of 37,000 potential drugs on C. elegans (a type of worm) infected with E. faecalis (a type of bacteria). That bacterium causes life-threatening infections in humans. C. elegans are tiny nematode worms that are widely used in scientific research. The tests identified 28 potential new drugs never before reported to have germ-fighting effects. Some of the potential new drugs worked in ways that appeared to be totally different than existing antibiotics.

Chemical Biology: "High-Throughput Screen for Novel Antimicrobials using a Whole Animal Infection Model" [ACS Chem. Biol., 2009, 4 (7), pp 527?533, DOI: 10.1021/cb900084v].

 

Growing evidence of marijuana smoke's potential dangers

Genotoxicity of Mainstream and Sidestream Marijuana and Tobacco Smoke Condensates

Smoking marijuana causes more damage to cells and DNA than smoking tobacco, scientists say.

[Image credit: Wikimedia Commons]

In a finding that challenges the increasingly popular belief that smoking marijuana is less harmful to health than smoking tobacco, researchers in Canada are reporting that smoking marijuana, like smoking tobacco, has toxic effects on cells. Their study is scheduled for the Aug. 17 issue of ACS' Chemical Research in Toxicology, a monthly journal.

Rebecca Maertens and colleagues note that people often view marijuana as a "natural" product and less harmful than tobacco. As public attitudes toward marijuana change and legal restrictions ease in some countries, use of marijuana is increasing. Scientists know that marijuana smoke has adverse effects on the lungs. However, there is little knowledge about marijuana's potential to cause lung cancer due to the difficulty in identifying and studying people who have smoked only marijuana.

The new study begins to address that question by comparing marijuana smoke vs. tobacco smoke in terms of toxicity to cells and to DNA. Scientists exposed cultured animal cells and bacteria to condensed smoke samples from both marijuana and tobacco. There were distinct differences in the degree and type of toxicity elicited by marijuana and cigarette smoke. Marijuana smoke caused significantly more damage to cells and DNA than tobacco smoke, the researchers note. However, tobacco smoke caused chromosome damage while marijuana did not.

Chemical Research in Toxicology: "The Genotoxicity of Mainstream and Sidestream Marijuana and Tobacco Smoke Condensates" [Chem. Res. Toxicol., Article ASAP; Publication Date (Web): July 17, 2009].

 

Re-examination of T. rex verifies disputed biochemical remains

A new analysis of the remains of a T. rex has confirmed traces of protein from blood and bone, tendons, or cartilage

 A new analysis of the remains of a T. rex has confirmed traces of protein from blood and bone, tendons, or cartilage.

[Image credit: Wikimedia Commons]

A new analysis of the remains of a Tyrannosaurus rex (T. rex) that roamed Earth 68 million years ago has confirmed traces of protein from blood and bone, tendons, or cartilage. The findings, scheduled for publication in the Sept. 4 issue of ACS' monthly Journal of Proteome Research, is the latest addition to an ongoing controversy over which biochemical remnants can be detected in the dino.

In the study, Marshall Bern, Brett S. Phinney and David Goldberg point out that the first analysis in 2007 of a well-preserved, fossilized T. rex bone identified traces of seven distinct protein fragments, or peptides, from collagen. That material is one of the primary components of bone, tendons and other connective tissue. However, later studies disputed that finding, suggesting that it was a statistical fluke or the result of contamination from another laboratory sample.

The scientists describe reanalysis of the T. rex data and also report finding evidence of substances found in collagen. "In summary, we find nothing obviously wrong with the Tyrannosaurus rex [analysis from 2007]," the report states. "The identified peptides seem consistent with a sample containing old, quite possibly very ancient, bird-like bone, contaminated with only fairly explicable proteins. Hemoglobin and collagen are plausible proteins to find in fossil bone, because they are two of the most abundant proteins in bone and bone marrow."

Journal of Proteome Research: "Reanalysis of Tyrannosaurus Rex Mass Spectra" [J. Proteome Res., Article ASAP].

 

Freshly crushed garlic better for the heart than processed

Freshly crushed garlic is better for the heart than dried garlic, scientists are reporting

Freshly crushed garlic is better for the heart than dried garlic, scientists are reporting.

[Image credit: Wikimedia Commons]

A new study reports what scientists term the first scientific evidence that freshly crushed garlic has more potent heart-healthy effects than dried garlic. Scheduled for the Aug. 12 issue of the Journal of Agricultural and Food Chemistry, it also challenges the widespread belief that most of garlic's benefits are due to its rich array of antioxidants. Instead, garlic's heart-healthy effects seem to result mainly from hydrogen sulfide, a chemical signaling substance that forms after garlic is cut or crushed and relaxes blood vessels when eaten.

In the study, Dipak K. Das and colleagues point out that raw, crushed garlic generates hydrogen sulfide through a chemical reaction. Although best known as the stuff that gives rotten eggs their distinctive odor, hydrogen sulfide also acts as a chemical messenger in the body, relaxing blood vessels and allowing more blood to pass through. Processed and cooked garlic, however, loses its ability to generate hydrogen sulfide.

The scientists gave freshly crushed garlic and processed garlic to two groups of lab rats, and then studied how well the animals' hearts recovered from simulated heart attacks. "Both crushed and processed garlic reduced damage from lack of oxygen, but the fresh garlic group had a significantly greater effect on restoring good blood flow in the aorta and increased pressure in the left ventricle of the heart," Das said.

Journal of Agricultural and Food Chemistry: "Freshly crushed garlic is a superior cardioprotective agent than processed garlic" [J. Agric. Food Chem., Article ASAP; Publication Date (Web): July 17, 2009]

 

'Artificial Golgi' may provide new insight into key cell structure

Artificial version of the Golgi organelle

Researchers have developed an artificial version of the Golgi organelle, shown in this illustration of a cell cross-section. The device could lead to a better method for producing heparin, they say.

[Image credit: The American Chemical Society]

Scientists in New York and North Carolina are reporting assembly of the first functioning prototype of an artificial Golgi organelle. That key structure inside cells helps process and package hormones, enzymes, and other substances that allow the body to function normally. The lab-on-a-chip device could lead to a faster and safer method for producing heparin, the widely used anticoagulant or blood thinner, the researchers note. Their study is scheduled for the Aug. 12 issue of the Journal of the American Chemical Society, a weekly publication.

The Golgi organelle is named for Camillo Golgi, the Italian scientist and Nobel Prize winner who discovered the structure in 1898. It is composed of a network of sacs, stacked like a deck of playing cards, located inside cells. In the new study, Robert Linhardt and colleagues point out that Golgi bodies are one of the most poorly understood organelles (specialized structures inside cells) in the human body. Scientists already know, however, that the organelles play a key role in producing heparin, a substance that helps prevent clotting.

The researchers describe development of a prototype lab-on-a-chip device that closely mimics the natural Golgi apparatus. They showed in lab tests that the device could quickly and efficiently produce heparin. It did so in an assembly-line fashion using a combination of enzymes, sugars and other raw materials and demonstrated that the substance has a strong clot-fighting potential. In the future, an "artificial Golgi" could lead to a faster and safer method for producing heparin, the scientists suggest.

Journal of the American Chemical Society: "Toward an Artificial Golgi: Redesigning the Biological Activities of Heparin Sulfate on a Digital Microfluidic Chip" [J. Am. Chem. Soc., Article ASAP; DOI: 10.1021/ja903038d].

 

A 'shrimp cocktail' to fuel cars and trucks

shrimp shells

A substance made from shrimp shells may transform biodiesel production into a faster, less expensive and more eco-friendly process, researchers are reporting.

[Image credit: Wikimedia Commons]

Call it a "shrimp cocktail" for your fuel tank. Scientists in China are reporting development of a catalyst made from shrimp shells that could transform production of biodiesel fuel into a faster, less expensive, and more environmentally friendly process. Their study is scheduled for the Aug. 20 issue of ACS' Energy & Fuels, a bi-monthly journal.

Xinsheng Zheng and colleagues note that an energy-hungry world, concerned about global warming, increasingly puts its future fuel hopes on renewable fuels like biodiesel. Today's biodiesel production processes, however, require catalysts to speed up the chemical reactions that transform soybean, canola, and other plant oils into diesel fuel. Traditional catalysts cannot be reused and must be neutralized with large amounts of water - another increasingly scarce resource - leaving behind large amounts of polluted wastewater.

The researchers describe development of a new catalyst produced from shrimp shells. In laboratory tests, the shrimp shell catalysts converted canola oil to biodiesel (89 percent conversion in three hours) faster and more efficiently than some conventional catalysts. The new catalysts also can be reused and the process minimizes waste production and pollution, the scientists note.

Energy & Fuels: "Shrimp Shell Catalyst for Biodiesel Production" [Energy Fuels, Article ASAP; DOI: 10.1021/ef900273y].



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May

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Jul

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Oct

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Dec

2008:

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