Current Articles in the field of Soft Matter published online in scientific journals.
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On this page considered biochemistry journals:
Soft Matter - published by
The Royal Society of Chemistry -
... has a global circulation and interdisciplinary audience with a particular focus on the interface between physics, materials science, biology, chemical engineering and chemistry.
Physical Review E - published by
The American Physical Society -
Journal for research in statistical, nonlinear and soft-matter physics.
The European Physical Journal E, Soft Matter - published by
EDP Scienes -
EPJE publishes papers describing advances in the understanding of the interdisciplinary science of soft matter.
Current research articles of the mentioned
journals:
Tianming Wang, Ranjana Patel, Brian Derby
(Paper from Soft Matter)
Tianming Wang, Soft Matter, 2009, DOI: 10.1039/b807758d
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Author(s): Evgeniy Khain, Baruch Meerson, and Pavel V. Sasorov<br/>Thermal wall is a convenient idealization of a rapidly vibrating plate used for vibrofluidization of granular materials. The objective of this work is to incorporate the Knudsen temperature jump at thermal wall in the Navier-Stokes hydrodynamic modeling of dilute granular gases of monodisperse parti...<br/>[Phys. Rev. E 78, 041303] Published Fri Oct 03, 2008
Author(s): Nicola Pugno, Federico Bosia, Antonio S. Gliozzi, Pier Paolo Delsanto, and Alberto Carpinteri<br/>The problem of characterizing damage evolution in a generic material is addressed with the aim of tracing it back to existing growth models in other fields of research. Based on energetic considerations, a system evolution equation is derived for a generic damage indicator describing a material syst...<br/>[Phys. Rev. E 78, 046103] Published Fri Oct 03, 2008
Author(s): Jane X. Wang, Gina Poe, and Michal Zochowski<br/>Hippocampal-neocortical interactions are key to the rapid formation of novel associative memories in the hippocampus and consolidation to long term storage sites in the neocortex. We investigated the role of network correlates during information processing in hippocampal-cortical networks. We found ...<br/>[Phys. Rev. E 78, 041905] Published Fri Oct 03, 2008
Author(s): Tsumoru Shintake<br/>The number of photons produced by coherent x-ray scattering from a single biomolecule is very small because of its extremely small elastic-scattering cross section and low damage threshold. Even with a high x-ray flux of 3Ă10^{12} photons per 100-nm -diameter spot and an ultrashort pulse of 10fs dr...<br/>[Phys. Rev. E 78, 041906] Published Fri Oct 03, 2008
Author(s): Will Ray, Kurt Wiesenfeld, and Jeffrey L. Rogers<br/>With modification, a recently proposed laser array model is found to agree quantitatively with fiber laser experiments. Comparisons of transient behavior, stable dynamical states, and transitions are made using both previously published and new experiments. While the original model agrees well for f...<br/>[Phys. Rev. E 78, 046203] Published Fri Oct 03, 2008
Author(s): Song-Ho Chong<br/>We develop an extended version of the mode-coupling theory (MCT) for glass transition, which incorporates activated hopping processes via the dynamical theory originally formulated to describe diffusion-jump processes in crystals. The dynamical-theory approach adapted here to glass-forming liquids t...<br/>[Phys. Rev. E 78, 041501] Published Fri Oct 03, 2008
Author(s): Alexander Patashinski and Mark Ratner<br/>Both the energy differences between metastable and stable phases and the energy barriers separating these phases decrease with decreasing particle number. Then, for small enough systems, random heterophasic fluctuations of the entire system become an observable form of thermal motion. We discuss mec...<br/>[Phys. Rev. E 78, 041106] Published Fri Oct 03, 2008
Author(s): Yanghua Xiao, Ben D. MacArthur, Hui Wang, Momiao Xiong, and Wei Wang<br/>A defining feature of many large empirical networks is their intrinsic complexity. However, many networks also contain a large degree of structural repetition. An immediate question then arises: can we characterize essential network complexity while excluding structural redundancy? In this article w...<br/>[Phys. Rev. E 78, 046102] Published Fri Oct 03, 2008
Author(s): Andrea Fortini, Eduardo Sanz, and Marjolein Dijkstra<br/>We systematically study the relationship between equilibrium and nonequilibrium phase diagrams of a system of short-ranged attractive colloids. Using Monte Carlo and Brownian dynamics simulations we find a window of enhanced crystallization that is limited at high interaction strength by a slowing d...<br/>[Phys. Rev. E 78, 041402] Published Fri Oct 03, 2008
Author(s): M. A. Miranda and J. Burguete<br/>The study and characterization of the diversity of spatiotemporal patterns generated when a rectangular layer of fluid is locally heated beneath its free surface is presented. We focus on the instability of a stationary cellular pattern of wave number k_{s} which undergoes a globally subcritical tra...<br/>[Phys. Rev. E 78, 046305] Published Fri Oct 03, 2008
David E. Bergbreiter, Kang-Shyang Liao
(Highlight from Soft Matter)
David E. Bergbreiter, Soft Matter, 2009, DOI: 10.1039/b810852h
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Jacques Fattaccioli, Jean Baudry, Nelly Henry, Francoise Brochard-Wyart, Jerome Bibette
(Paper from Soft Matter)
Jacques Fattaccioli, Soft Matter, 2008, DOI: 10.1039/b806635c
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Author(s): Y. Sivan, G. Fibich, B. Ilan, and M. I. Weinstein<br/>We present a unified approach for qualitative and quantitative analysis of stability and instability dynamics of positive bright solitons in multidimensional focusing nonlinear media with a potential (lattice), which can be periodic, periodic with defects, quasiperiodic, single waveguide, etc. We sh...<br/>[Phys. Rev. E 78, 046602] Published Thu Oct 02, 2008
Author(s): Brian R. Long, Martin Heller, Jason P. Beech, Heiner Linke, Henrik Bruus, and Jonas O. Tegenfeldt<br/>Deterministic lateral displacement (DLD) devices separate micrometer-scale particles in solution based on their size using a laminar microfluidic flow in an array of obstacles. We investigate array geometries with rational row-shift fractions in DLD devices by use of a simple model including both ad...<br/>[Phys. Rev. E 78, 046304] Published Thu Oct 02, 2008
Author(s): D. Jamet and C. Misbah<br/>In two recent papers [D. Jamet and C. Misbah, Phys. Rev. E 76, 051907 (2007); 78, 031902 (2008)], we considered a thermodynamically consistent model for vesicles and membranes, where we dealt, in the first paper, with the membrane local incompressibility condition, while in the second one with the b...<br/>[Phys. Rev. E 78, 041903] Published Thu Oct 02, 2008
Author(s): Wm. G. Hoover, Carol G. Hoover, and Janka Petravic<br/>Homogeneous shear flows (with constant strainrate dv_{x} âdy ) are generated with the Dollâs and Sllod algorithms and compared to corresponding inhomogeneous boundary-driven flows. We use one-, two-, and three-dimensional smooth-particle weight functions for computing instantaneous spatial avera...<br/>[Phys. Rev. E 78, 046701] Published Thu Oct 02, 2008
Author(s): Ramses van Zon, Lisandro Hernåndez de la Peña, Gilles H. Peslherbe, and Jeremy Schofield<br/>Nonequilibrium path-integral methods for computing quantum free-energy differences are applied to a quantum particle trapped in a harmonic well of uniformly changing strength with the purpose of establishing the convergence properties of the work distribution and free energy as the number of degrees...<br/>[Phys. Rev. E 78, 041104] Published Thu Oct 02, 2008
Author(s): Peter R. Johnston<br/>The simulation of problems in electrocardiography using the bidomain model for cardiac tissue often creates issues with satisfaction of the boundary conditions required to obtain a solution. Recent studies have proposed approximate methods for solving such problems by satisfying the boundary conditi...<br/>[Phys. Rev. E 78, 041904] Published Thu Oct 02, 2008
Author(s): Xin Lu, Baowen Li, and Chang-Qin Wu<br/>The normal modes and the melting character of a bilayer system consisting of binary charged particles with different charge and/or different mass, interacting through a Coulomb potential and confined in a parabolic trap are investigated. The normal mode spectrum is discussed as a function of the cha...<br/>[Phys. Rev. E 78, 041401] Published Thu Oct 02, 2008
Author(s): S. Servidio, W. H. Matthaeus, and V. Carbone<br/>We explore the problem of the ergodicity of magnetohydrodynamics and Hall magnetohydrodynamics in three-dimensional, ideal Galerkin systems that are truncated to a finite number of Fourier modes. We show how single Fourier modes follow the Gibbs ensemble prediction, and how the ergodicity of the pha...<br/>[Phys. Rev. E 78, 046302] Published Thu Oct 02, 2008
Author(s): Adina Lederhendler and Ofer Biham<br/>Systems of reacting particles, which are well mixed or distributed homogeneously in space, are commonly modeled by deterministic rate equations. These equations, which are based on the mean-field approximation, are valid for macroscopic systems. However, they neglect fluctuations in the particle pop...<br/>[Phys. Rev. E 78, 041105] Published Thu Oct 02, 2008
Author(s): M. Giona and S. Cerbelli<br/>We study the steady-state characterization of an advecting-diffusing three-dimensional flow defined in the annular region between coaxial cylinders of finite length that can rotate independently. A phase transition occurs when the cylinder velocities vary, which controls the spectral properties of t...<br/>[Phys. Rev. E 78, 046303] Published Thu Oct 02, 2008
Author(s): V. Preobrazhensky, O. Bou Matar, and P. Pernod<br/>The dynamics of three-wave parametric coupling is considered on an example of nonequilibrium magnetostrictive medium under electromagnetic pumping. Subthreshold and supercritical mode of three-wave excitation are described analytically and simulated numerically for a triad of magnetoelastic waves. T...<br/>[Phys. Rev. E 78, 046603] Published Thu Oct 02, 2008
Author(s): Ramses van Zon, Lisandro Hernåndez de la Peña, Gilles H. Peslherbe, and Jeremy Schofield<br/>In this paper, the imaginary-time path-integral representation of the canonical partition function of a quantum system and nonequilibrium work fluctuation relations are combined to yield methods for computing free-energy differences in quantum systems using nonequilibrium processes. The path-integra...<br/>[Phys. Rev. E 78, 041103] Published Thu Oct 02, 2008
Author(s): John Ardelius and Lenka ZdeborovĂĄ<br/>We study geometrical properties of the complete set of solutions of the random 3-satisfiability problem. We show that even for moderate system sizes the number of clusters corresponds surprisingly well with the theoretic asymptotic prediction. We locate the freezing transition in the space of soluti...<br/><img src="http://prola.aps.org/graphics/rapid30x30.gif" width="30" height="30" alt="Rapid Communication"/><br/>[Phys. Rev. E 78, 040101] Published Thu Oct 02, 2008
Author(s): Reuben Son, John A. Perez, and Greg A. Voth<br/>We experimentally measure the decay of a quasi-two-dimensional granular gas under gravity. A granular gas is created by vibrofluidization, after which the energy input is halted, and the time-dependent statistical properties of the decaying gas are measured with video particle tracking. There are tw...<br/>[Phys. Rev. E 78, 041302] Published Thu Oct 02, 2008
Klaus Kroy
(Review Article from Soft Matter)
Klaus Kroy, Soft Matter, 2009, DOI: 10.1039/b807018k
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Author(s): R. Bakanas<br/>The rectified oscillatory motion of the âbistableâ fronts (BFs) joining two states of the different stability in a spatially extended system with two stable equilibria is studied by use of the macroscopic kinetic equation of the reaction-diffusion type. The adiabatic approximation is used: We as...<br/>[Phys. Rev. E 78, 046202] Published Wed Oct 01, 2008
Author(s): An-Cai Wu, Xin-Jian Xu, J. F. Mendes, and Ying-Hai Wang<br/>We study a simple reaction-diffusion population model [proposed by A. Windus and H. J. Jensen, J. Phys. A: Math. Theor. 40, 2287 (2007)] on scale-free networks. In the case of fully random diffusion, the network topology cannot affect the critical death rate, whereas the heterogeneous connectivity c...<br/>[Phys. Rev. E 78, 047101] Published Wed Oct 01, 2008
Author(s): Jinying Xu, Yunxia Dong, and Xiangdong Zhang<br/>Relativistic energy loss and photon emission in the interaction of ideal and nonideal metamaterial cloaks with an external electron beam are studied based on the classical electrodynamics. The effects of various imperfect parameters on the efficiency of the cloak are emphasized. The energy-loss spec...<br/>[Phys. Rev. E 78, 046601] Published Wed Oct 01, 2008
Author(s): A. Bergeon, J. Burke, E. Knobloch, and I. Mercader<br/>Homoclinic snaking is a term used to describe the back and forth oscillation of a branch of time-independent spatially localized states in a bistable, spatially reversible system as the localized structure grows in length by repeatedly adding rolls on either side. This behavior is simplest to unders...<br/>[Phys. Rev. E 78, 046201] Published Wed Oct 01, 2008
Author(s): Henning Struchtrup and Manuel Torrilhon<br/>The regularized 13 moment (R13) equations and their boundary conditions are considered for plane channel flows. Chapman-Enskog scaling based on the Knudsen number is used to reduce the equations. The reduced equations yield second-order slip conditions, and allow us to describe the characteristic di...<br/>[Phys. Rev. E 78, 046301] Published Wed Oct 01, 2008
Author(s): Yunfei Tang, Yifeng Shen, Jiong Yang, Xiaohan Liu, Jian Zi, and Baowen Li<br/>In this paper, we report experimental evidence of wave chaos using the double slit water surface wave experiment. We demonstrate that classical dynamics of a domain manifests itself in the interference patterns after the diffraction behind the double slit. For a domain whose classical dynamics is in...<br/>[Phys. Rev. E 78, 047201] Published Wed Oct 01, 2008
Arnaud Chiche, Christopher M. Stafford, Joao T. Cabral
(Communication from Soft Matter)
Arnaud Chiche, Soft Matter, 2008, DOI: 10.1039/b811817e
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Authors: J. Lei and K. Huang <br/>Eur. Phys. J. E PREPRINT, (2008) Received 10 October 2007 /
Published online 30 September 2008<br/> Pacs: 87.14.E- - Proteins, 87.15.Cc - Folding: thermodynamics, statistical mechanics, models, and pathways, 87.15.A- - Theory, modeling, and computer simulation, 87.15.H- - Dynamics of biomolecules<br/>
Fatima M. Plieva, Peter Ekstrom, Igor Yu. Galaev, Bo Mattiasson
(Paper from Soft Matter)
Fatima M. Plieva, Soft Matter, 2008, DOI: 10.1039/b804105a
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Hui Wu, Rui Zhang, Yao Sun, Dandan Lin, Zhiqiang Sun, Wei Pan, Patrick Downs
(Paper from Soft Matter)
Hui Wu, Soft Matter, 2008, DOI: 10.1039/b805570j
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Karolin Frykholm, Francesca Baldelli Bombelli, Bengt Norden, Fredrik Westerlund
(Paper from Soft Matter)
Karolin Frykholm, Soft Matter, 2008, DOI: 10.1039/b806569a
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Bernard P. Binks, Mark Kirkland, Jhonny A. Rodrigues
(Paper from Soft Matter)
Bernard P. Binks, Soft Matter, 2008, DOI: 10.1039/b811291f
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Authors: H. A. Knudsen, J. H. Werth and D. E. Wolf <br/>Eur. Phys. J. E PREPRINT, (2008) Received 18 April 2008 /
Published online 25 September 2008<br/> Pacs: 83.10.Mj - Molecular dynamics, Brownian dynamics, 82.70.Dd - Colloids, 83.10.Rs - Computer simulation of molecular and particle dynamics<br/>
Uros Tkalec, Miha Skarabot, Igor Musevic
(Paper from Soft Matter)
Uros Tkalec, Soft Matter, 2008, DOI: 10.1039/b807979j
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Antonello Di Crescenzo, Davide Demurtas, Andrea Renzetti, Gabriella Siani, Paolo De Maria, Moreno Meneghetti, Maurizio Prato, Antonella Fontana
(Communication from Soft Matter)
Antonello Di Crescenzo, Soft Matter, 2009, DOI: 10.1039/b812022f
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Kurt M. Schmoller, Oliver Lieleg, Andreas R. Bausch
(Communication from Soft Matter)
Kurt M. Schmoller, Soft Matter, 2008, DOI: 10.1039/b808582j
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Marjo Paakko, Jaana Vapaavuori, Riitta Silvennoinen, Harri Kosonen, Mikael Ankerfors, Tom Lindstrom, Lars A. Berglund, Olli Ikkala
(Paper from Soft Matter)
Marjo Paakko, Soft Matter, 2008, DOI: 10.1039/b810371b
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Leonid Ionov, Vera Bocharova, Stefan Diez
(Communication from Soft Matter)
Leonid Ionov, Soft Matter, 2009, DOI: 10.1039/b813295j
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Hayley A. Every, Leen van der Ham, Stephen J. Picken, Eduardo Mendes
(Paper from Soft Matter)
Hayley A. Every, Soft Matter, 2009, DOI: 10.1039/b807298a
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Lynne Perlin, Sheila MacNeil, Stephen Rimmer
(Review Article from Soft Matter)
Lynne Perlin, Soft Matter, 2008, DOI: 10.1039/b801646a
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Rodica Borcia, Ion Dan Borcia, Michael Bestehorn
(Communication from Soft Matter)
Rodica Borcia, Soft Matter, 2008, DOI: 10.1039/b809523j
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Clement C. Campillo, Andre P. Schroder, Carlos M. Marques, Brigitte Pepin-Donat
(Paper from Soft Matter)
Clement C. Campillo, Soft Matter, 2008, DOI: 10.1039/b808472f
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Jorg Baumgartl, Julian Dietrich, Jure Dobnikar, Clemens Bechinger, Hans Hennig von Grunberg
(Paper from Soft Matter)
Jorg Baumgartl, Soft Matter, 2008, DOI: 10.1039/b807881e
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Authors: P. -P. Cortet, L. Vanel and S. Ciliberto <br/>Eur. Phys. J. E PREPRINT, (2008) Received 23 January 2008 /
Published online 16 September 2008<br/> Pacs: 46.50.+a - Fracture mechanics, fatigue and cracks, 61.41.+e - Polymers, elastomers, and plastics, 81.40.Lm - Deformation, plasticity, and creep, 68.35.Ct - Interface structure and roughness<br/>
Authors: M. Rex and H. Löwen <br/>Eur. Phys. J. E PREPRINT, (2008) Received 11 June 2008 /
Published online 16 September 2008<br/> Pacs: 82.70.Dd - Colloids, 61.20.Ja - Computer simulation of liquid structure, 64.70.D- - Solid-liquid transitions, 05.70.Ln - Nonequilibrium and irreversible thermodynamics<br/>
Authors: C. Gögelein and R. Tuinier <br/>Eur. Phys. J. E PREPRINT, (2008) Received 21 May 2008 /
Published online 16 September 2008<br/> Pacs: 82.70.Dd - Colloids, 61.25.H- - Macromolecular and polymers solutions; polymer melts, 68.35.Rh - Phase transitions and critical phenomena<br/>
Tamar Gitli, Michael S. Silverstein
(Paper from Soft Matter)
Tamar Gitli, Soft Matter, 2008, DOI: 10.1039/b809346f
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Eleanor Stride, Mohan Edirisinghe
(Review Article from Soft Matter)
Eleanor Stride, Soft Matter, 2008, DOI: 10.1039/b809517p
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Authors: A. Basu, J. F. Joanny, F. JĂŒlicher and J. Prost <br/>Eur. Phys. J. E PREPRINT, (2008) Received 10 March 2008 /
Published online 11 September 2008<br/> Pacs: 87.17.Jj - Cell locomotion, chemotaxis, 82.70.Gg - Gels and sols, 82.35.Gh - Polymers on surfaces; adhesion<br/>
Authors: I. Cheddadi, P. Saramito, C. Raufaste, P. Marmottant and F. Graner <br/>Eur. Phys. J. E PREPRINT, (2008) Received 6 February 2008 /
Published online 11 September 2008<br/> Pacs: 47.57.Bc - Foams and emulsions, 83.60.La - Viscoplasticity; yield stress, 83.60.Df - Nonlinear viscoelasticity, 02.60.Cb - Numerical simulation; solution of equations<br/>
Xiumei Wang, Akihiro Horii, Shuguang Zhang
(Paper from Soft Matter)
Xiumei Wang, Soft Matter, 2008, DOI: 10.1039/b807155a
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Rhutesh K. Shah, Jin-Woong Kim, Jeremy J. Agresti, David A. Weitz, Liang-Yin Chu
(Highlight from Soft Matter)
Rhutesh K. Shah, Soft Matter, 2008, DOI: 10.1039/b808653m
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D. Raz-Ben Aroush, R. Zaidel-Bar, A. D. Bershadsky, H. D. Wagner
(Paper from Soft Matter)
D. Raz-Ben Aroush, Soft Matter, 2008, DOI: 10.1039/b804643n
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Margarita Staykova, Reinhard Lipowsky, Rumiana Dimova
(Communication from Soft Matter)
Margarita Staykova, Soft Matter, 2008, DOI: 10.1039/b811876k
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Yun Yan, Ludger Harnau, Nicolaas A. M. Besseling, Arie de Keizer, Matthias Ballauff, Sabine Rosenfeldt, Martien A. Cohen Stuart
(Paper from Soft Matter)
Yun Yan, Soft Matter, 2008, DOI: 10.1039/b808151d
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Frank Pierce Hubbard Jr., Nicholas Lawrence Abbott
(Paper from Soft Matter)
Frank Pierce Hubbard Jr., Soft Matter, 2008, DOI: 10.1039/b801981a
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Yang Liu, Takanori Murao, Yoko Nakano, Masanobu Naito, Michiya Fujiki
(Paper from Soft Matter)
Yang Liu, Soft Matter, 2008, DOI: 10.1039/b808252a
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Antal Jakli, Bohdan Senyuk, Guangxun Liao, Oleg D. Lavrentovich
(Paper from Soft Matter)
Antal Jakli, Soft Matter, 2008, DOI: 10.1039/b807927g
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C. M. Roland
(Highlight from Soft Matter)
C. M. Roland, Soft Matter, 2008, DOI: 10.1039/b804794d
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Shion Seng Chang, Ana B. Rodriguez, Anthony M. Higgins, Chuan Liu, Mark Geoghegan, Henning Sirringhaus, Fabrice Cousin, Robert M. Dalgleish, Yvonne Deng
(Paper from Soft Matter)
Shion Seng Chang, Soft Matter, 2008, DOI: 10.1039/b810278c
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Bogdan Zdyrko, Olha Hoy, Mark K. Kinnan, George Chumanov, Igor Luzinov
(Paper from Soft Matter)
Bogdan Zdyrko, Soft Matter, 2008, DOI: 10.1039/b810038a
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Authors: D. Hajnal and M. Fuchs <br/>Eur. Phys. J. E PREPRINT, (2008) Received 30 April 2008 /
Published online 9 September 2008<br/> Pacs: 82.70.Dd - Colloids, 83.50.Ax - Steady shear flows, viscometric flow, 83.60.Df - Nonlinear viscoelasticity, 64.70.Q- - Theory and modeling of the glass transition<br/>
Authors: M. Oettel, A. Domınguez, M. Tasinkevych and S. Dietrich <br/>Eur. Phys. J. E PREPRINT, (2008) Received 16 April 2008 /
Published online 9 September 2008<br/> Pacs: 82.70.Dd - Colloids, 68.03.Cd - Surface tension and related phenomena, 61.30.-v - Liquid crystals<br/>
Authors: P. C. Fannin, I. Malaescu, C. N. Marin and N. Stefu <br/>Eur. Phys. J. E PREPRINT, (2008) Received 22 April 2008 /
Published online 9 September 2008<br/> Pacs: 75.50.Mm - Magnetic liquids, 75.40.Gb - Dynamic properties (dynamic susceptibility, spin waves, spin diffusion, dynamic scaling, etc.), 77.22.Gm - Dielectric loss and relaxation<br/>